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Paul Zaharias
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Exon-Capture-Based Phylogeny and Diversification of the Venomous Gastropods (Neogastropoda, Conoidea)
J Abdelkrim, L Aznar-Cormano, AE Fedosov, YI Kantor, P Lozouet, ...
Molecular biology and evolution 35 (10), 2355-2374, 2018
622018
Modern drought conditions in western Sahel unprecedented in the past 1600 years
M Carré, M Azzoug, P Zaharias, A Camara, R Cheddadi, M Chevalier, ...
Climate Dynamics 52, 1949-1964, 2019
322019
DISCO: Species tree inference using multicopy gene family tree decomposition
J Willson, MS Roddur, B Liu, P Zaharias, T Warnow
Systematic Biology 71 (3), 610-629, 2022
282022
Delimiting species of marine gastropods (Turridae, Conoidea) using RAD‐sequencing in an integrative taxonomy framework
J Abdelkrim, L Aznar‐Cormano, B Buge, A Fedosov, Y Kantor, P Zaharias, ...
Molecular ecology, 2018
242018
Venom Diversity and Evolution in the Most Divergent Cone Snail Genus Profundiconus
G Fassio, MV Modica, L Mary, P Zaharias, AE Fedosov, J Gorson, ...
Toxins 11 (11), 623, 2019
21*2019
Data, Time and Money: Evaluating the Best Compromise for Inferring Molecular Phylogenies of Non-Model Animal Taxa
P Zaharias, E Pante, D Gey, A Fedosov, N Puillandre
Molecular phylogenetics and evolution 142, 106660, 2020
192020
A quest for the lost types of Lophiotoma (Gastropoda: Conoidea: Turridae): integrative taxonomy in a nomenclatural mess
N Puillandre, AE Fedosov, P Zaharias, L Aznar-Cormano, YI Kantor
Zoological Journal of the Linnean Society 181 (2), 243-271, 2017
182017
MAGUS+ eHMMs: improved multiple sequence alignment accuracy for fragmentary sequences
C Shen, P Zaharias, T Warnow
Bioinformatics 38 (4), 918-924, 2022
152022
Re-evaluating deep neural networks for phylogeny estimation: the issue of taxon sampling
P Zaharias, M Grosshauser, T Warnow
Journal of Computational Biology 29 (1), 74-89, 2022
152022
Just the once will not hurt: DNA suggests species lumping over two oceans in deep-sea snails (Cryptogemma)
P Zaharias, YI Kantor, AE Fedosov, F Criscione, A Hallan, Y Kano, ...
Zoological Journal of the Linnean Society 190 (2), 532-557, 2020
142020
Neogastropod (Mollusca, Gastropoda) phylogeny: A step forward with mitogenomes
T Lemarcis, AE Fedosov, YI Kantor, J Abdelkrim, P Zaharias, N Puillandre
Zoologica Scripta, 2022
102022
Every hooked beak is maintained by a prey: ecological signal in cephalopod beak shape
M Roscian, A Herrel, P Zaharias, R Cornette, V Fernandez, I Kruta, ...
Functional Ecology, 2022
102022
A phylogeny-aware approach reveals unexpected venom components in divergent lineages of cone snails
A Fedosov, P Zaharias, N Puillandre
Proceedings of the Royal Society B 288 (1954), 20211017, 2021
82021
Disjoint Tree Mergers for Large-Scale Maximum Likelihood Tree Estimation
M Park, P Zaharias, T Warnow
Algorithms 14 (5), 148, 2021
62021
Recent progress on methods for estimating and updating large phylogenies
P Zaharias, T Warnow
Philosophical Transactions of the Royal Society B 377 (1861), 20210244, 2022
52022
The maximum weight trace alignment merging problem
P Zaharias, V Smirnov, T Warnow
Algorithms for Computational Biology: 8th International Conference, AlCoB …, 2021
42021
Robustness of Felsenstein's versus Transfer Bootstrap Supports with respect to Taxon Sampling
P Zaharias, F Lemoine, O Gascuel
Systematic Biology, 2023
22023
Large-Scale Multiple Sequence Alignment and the Maximum Weight Trace Alignment Merging Problem
P Zaharias, V Smirnov, T Warnow
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2022
22022
Accurate large-scale phylogeny-aware alignment using BAli-Phy
M Gupta, P Zaharias, T Warnow
Bioinformatics 37 (24), 4677-4683, 2021
12021
Phylogenomics of Neogastropoda: the backbone hidden in the bush
AE Fedosov, P Zaharias, T Lemarcis, MV Modica, M Holford, M Oliverio, ...
Systematic Biology, syae010, 2024
2024
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Articles 1–20