Oluwatosin Oluwadare
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An overview of methods for reconstructing 3-D chromosome and genome structures from Hi-C data
O Oluwadare, M Highsmith, J Cheng
Biological procedures online 21, 1-20, 2019
A maximum likelihood algorithm for reconstructing 3D structures of human chromosomes from chromosomal contact data
O Oluwadare, Y Zhang, J Cheng
BMC genomics 19, 1-17, 2018
ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data
O Oluwadare, J Cheng
BMC bioinformatics 18 (1), 480, 2017
GMOL: an interactive tool for 3D genome structure visualization
J Nowotny, A Wells, O Oluwadare, L Xu, R Cao, T Trieu, C He, J Cheng
Scientific reports 6 (1), 1-8, 2016
GenomeFlow: a comprehensive graphical tool for modeling and analyzing 3D genome structure
T Trieu, O Oluwadare, J Wopata, J Cheng
Bioinformatics 35 (8), 1416-1418, 2019
Hierarchical reconstruction of high-resolution 3D models of large chromosomes
T Trieu, O Oluwadare, J Cheng
Scientific reports 9 (1), 4971, 2019
Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data
J Nowotny, S Ahmed, L Xu, O Oluwadare, H Chen, N Hensley, T Trieu, ...
BMC bioinformatics 16, 1-19, 2015
GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data
O Oluwadare, M Highsmith, D Turner, E Lieberman Aiden, J Cheng
BMC molecular and cell biology 21, 1-10, 2020
EnsembleSplice: ensemble deep learning model for splice site prediction
V Akpokiro, T Martin, O Oluwadare
BMC bioinformatics 23 (1), 413, 2022
HiCARN: resolution enhancement of Hi-C data using cascading residual networks
P Hicks, O Oluwadare
Bioinformatics 38 (9), 2414-2421, 2022
Deep learning for denoising hi-c chromosomal contact data
M Highsmith, O Oluwadare, J Cheng
bioRxiv, 692558, 2019
HiC-GNN: A generalizable model for 3D chromosome reconstruction using graph convolutional neural networks
V Hovenga, J Kalita, O Oluwadare
Computational and Structural Biotechnology Journal 21, 812-836, 2023
DeepSplicer: an improved method of splice sites prediction using deep learning
V Akpokiro, O Oluwadare, J Kalita
2021 20th IEEE International Conference on Machine Learning and Applications …, 2021
Gait analysis on a smart floor for health monitoring
O Oluwadare
The University of Texas at Arlington, 2015
CNNSplice: Robust models for splice site prediction using convolutional neural networks
V Akpokiro, HMAM Chowdhury, S Olowofila, R Nusrat, O Oluwadare
Computational and Structural Biotechnology Journal 21, 3210-3223, 2023
ParticleChromo3D: a Particle Swarm Optimization algorithm for chromosome 3D structure prediction from Hi-C data
D Vadnais, M Middleton, O Oluwadare
BioData Mining 15 (1), 19, 2022
ChromeBat: A bio-inspired approach to 3D genome reconstruction
B Collins, O Oluwadare, P Brown
Genes 12 (11), 1757, 2021
Particlechromo3d+: A web server for particlechromo3d algorithm for 3d chromosome structure reconstruction
D Vadnais, O Oluwadare
Current Issues in Molecular Biology 45 (3), 2549-2560, 2023
Comparative study on chromatin loop callers using Hi-C data reveals their effectiveness
HMAM Chowdhury, T Boult, O Oluwadare
BMC bioinformatics 25 (1), 123, 2024
HiCForecast: Dynamic Network Optical Flow Estimation Algorithm for Spatiotemporal Hi-C Data Forecasting
D Pinchuk, O Oluwadare
Deep Learning, 7, 2023
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