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Dagmar Waltemath
Dagmar Waltemath
Professor of Medical Informatics
Dirección de correo verificada de uni-greifswald.de - Página principal
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Controlled vocabularies and semantics in systems biology
M Courtot, N Juty, C Knupfer, D Waltemath, A Zhukova, A Drager, ...
Molecular Systems Biology 7 (543), 2011
3332011
Reproducible computational biology experiments with SED-ML-the simulation experiment description markup language
D Waltemath, R Adams, FT Bergmann, M Hucka, F Kolpakov, AK Miller, ...
BMC systems biology 5, 1-10, 2011
2902011
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
2042020
Minimum information about a simulation experiment (MIASE)
D Waltemath, R Adams, DA Beard, FT Bergmann, US Bhalla, R Britten, ...
PLoS computational biology 7 (4), e1001122, 2011
1632011
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
BMC bioinformatics 15, 1-9, 2014
1482014
The systems biology markup language (SBML): language specification for level 3 version 2 core release 2
M Hucka, FT Bergmann, C Chaouiya, A Dräger, S Hoops, SM Keating, ...
Journal of integrative bioinformatics 16 (2), 20190021, 2019
1092019
The systems biology markup language (SBML): language specification for level 3 version 2 core
M Hucka, FT Bergmann, A Dräger, S Hoops, SM Keating, N Le Novère, ...
Journal of integrative bioinformatics 15 (1), 20170081, 2018
912018
Promoting coordinated development of community-based information standards for modeling in biology: the COMBINE initiative
M Hucka, DP Nickerson, GD Bader, FT Bergmann, J Cooper, E Demir, ...
Frontiers in bioengineering and biotechnology 3, 19, 2015
852015
SED-ML–An XML Format for the Implementation of the MIASE Guidelines
D Köhn, N Le Novere
International Conference on Computational Methods in Systems Biology, 176-190, 2008
782008
Harmonizing semantic annotations for computational models in biology
ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ...
Briefings in bioinformatics 20 (2), 540-550, 2019
652019
Toward community standards and software for whole-cell modeling
D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ...
IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016
642016
Combining computational models, semantic annotations and simulation experiments in a graph database
R Henkel, O Wolkenhauer, D Waltemath
Database 2015, bau130, 2015
622015
A call for virtual experiments: accelerating the scientific process
J Cooper, JO Vik, D Waltemath
Progress in biophysics and molecular biology 117 (1), 99-106, 2015
572015
How modeling standards, software, and initiatives support reproducibility in systems biology and systems medicine
D Waltemath, O Wolkenhauer
IEEE Transactions on Biomedical Engineering 63 (10), 1999-2006, 2016
552016
Ranked retrieval of computational biology models
R Henkel, L Endler, A Peters, N Le Novère, D Waltemath
BMC bioinformatics 11, 1-12, 2010
402010
Specifications of standards in systems and synthetic biology: status and developments in 2020
F Schreiber, B Sommer, T Czauderna, M Golebiewski, TE Gorochowski, ...
Journal of integrative bioinformatics 17 (2-3), 20200022, 2020
372020
Initiatives, concepts, and implementation practices of FAIR (findable, accessible, interoperable, and reusable) data principles in health data stewardship practice: protocol …
ET Inau, J Sack, D Waltemath, AA Zeleke
JMIR research protocols 10 (2), e22505, 2021
362021
Improving the reuse of computational models through version control
D Waltemath, R Henkel, R Hälke, M Scharm, O Wolkenhauer
Bioinformatics 29 (6), 742-748, 2013
342013
Notions of similarity for systems biology models
R Henkel, R Hoehndorf, T Kacprowski, C Knüpfer, W Liebermeister, ...
Briefings in bioinformatics 19 (1), 77-88, 2018
322018
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE)
D Waltemath, M Golebiewski, ML Blinov, P Gleeson, H Hermjakob, ...
Journal of integrative bioinformatics 17 (2-3), 20200005, 2020
312020
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