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Pierre Boyeau
Pierre Boyeau
Verified email at berkeley.edu
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Year
A Python library for probabilistic analysis of single-cell omics data
A Gayoso, R Lopez, G Xing, P Boyeau, V Valiollah Pour Amiri, J Hong, ...
Nature biotechnology 40 (2), 163-166, 2022
2882022
DestVI identifies continuums of cell types in spatial transcriptomics data
R Lopez, B Li, H Keren-Shaul, P Boyeau, M Kedmi, D Pilzer, A Jelinski, ...
Nature biotechnology 40 (9), 1360-1369, 2022
1022022
Predicting cellular responses to complex perturbations in high‐throughput screens
M Lotfollahi, A Klimovskaia Susmelj, C De Donno, L Hetzel, Y Ji, IL Ibarra, ...
Molecular systems biology 19 (6), e11517, 2023
812023
Valiollah Pour Amiri
A Gayoso, R Lopez, G Xing, P Boyeau
V., Hong, J., Wu, K., Jayasuriya, M., Mehlman, E., Langevin, M., et al, 163-166, 2022
592022
Decision-making with auto-encoding variational Bayes
R Lopez, P Boyeau, N Yosef, M Jordan, J Regier
Advances in Neural Information Processing Systems 33, 5081-5092, 2020
372020
Multi-resolution deconvolution of spatial transcriptomics data reveals continuous patterns of inflammation
R Lopez, B Li, H Keren-Shaul, P Boyeau, M Kedmi, D Pilzer, A Jelinski, ...
BioRxiv, 2021.05. 10.443517, 2021
222021
An empirical Bayes method for differential expression analysis of single cells with deep generative models
P Boyeau, J Regier, A Gayoso, MI Jordan, R Lopez, N Yosef
Proceedings of the National Academy of Sciences 120 (21), e2209124120, 2023
192023
Deep generative models for detecting differential expression in single cells
P Boyeau, R Lopez, J Regier, A Gayoso, MI Jordan, N Yosef
bioRxiv, 794289, 2019
192019
Deep generative modeling of sample-level heterogeneity in single-cell genomics
P Boyeau, J Hong, A Gayoso, M Kim, JL McFaline-Figueroa, MI Jordan, ...
BioRxiv, 2022.10. 04.510898, 2022
102022
AutoEval Done Right: Using Synthetic Data for Model Evaluation
P Boyeau, AN Angelopoulos, N Yosef, J Malik, MI Jordan
arXiv preprint arXiv:2403.07008, 2024
22024
CherryML: scalable maximum likelihood estimation of phylogenetic models
S Prillo, Y Deng, P Boyeau, X Li, PY Chen, YS Song
Nature methods 20 (8), 1232-1236, 2023
22023
Calibrated Identification of Feature Dependencies in Single-cell Multiomics
P Boyeau, S Bates, C Ergen, MI Jordan, N Yosef
bioRxiv, 2023.11. 03.565520, 2023
2023
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