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Dong Xu
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Year
Genome sequence of the palaeopolyploid soybean
J Schmutz, SB Cannon, J Schlueter, J Ma, T Mitros, W Nelson, DL Hyten, ...
Nature 463 (7278), 178-183, 2010
45982010
Hydrogen bonds and salt bridges across protein-protein interfaces.
D Xu, CJ Tsai, R Nussinov
Protein engineering 10 (9), 999-1012, 1997
5671997
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation
Y Liu, J Zhou, MV Omelchenko, AS Beliaev, A Venkateswaran, J Stair, ...
Proceedings of the National Academy of Sciences 100 (7), 4191-4196, 2003
4552003
An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants
M Libault, A Farmer, T Joshi, K Takahashi, RJ Langley, LD Franklin, J He, ...
The Plant Journal 63 (1), 86-99, 2010
4332010
A content-based recommender system for computer science publications
D Wang, Y Liang, D Xu, X Feng, R Guan
Knowledge-Based Systems 157, 1-9, 2018
4272018
Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees
Y Xu, V Olman, D Xu
Bioinformatics 18 (4), 536-545, 2002
4092002
scGNN is a novel graph neural network framework for single-cell RNA-Seq analyses
J Wang, A Ma, Y Chang, J Gong, Y Jiang, R Qi, C Wang, H Fu, Q Ma, ...
Nature communications 12 (1), 1882, 2021
3992021
Inferring gene regulatory networks from multiple microarray datasets
Y Wang, T Joshi, XS Zhang, D Xu, L Chen
Bioinformatics 22 (19), 2413-2420, 2006
3852006
Protein binding versus protein folding: the role of hydrophilic bridges in protein associations
D Xu, SL Lin, R Nussinov
Journal of molecular biology 265 (1), 68-84, 1997
3361997
Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing
KH Taylor, RS Kramer, JW Davis, J Guo, DJ Duff, D Xu, CW Caldwell, ...
Cancer research 67 (18), 8511-8518, 2007
3272007
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
L Peña-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ...
Genome Biol 9 (Suppl 1), S2, 2008
2992008
Musite, a tool for global prediction of general and kinase-specific phosphorylation sites
J Gao, JJ Thelen, AK Dunker, D Xu
Molecular & Cellular Proteomics 9 (12), 2586-2600, 2010
2722010
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
RJ Schmitz, Y He, O Valdés-López, SM Khan, T Joshi, MA Urich, JR Nery, ...
Genome research 23 (10), 1663-1674, 2013
2692013
Protein threading using PROSPECT: design and evaluation
Y Xu, D Xu
Proteins: Structure, Function, and Bioinformatics 40 (3), 343-354, 2000
2692000
Comparisons among two fertile and three male-sterile mitochondrial genomes of maize
JO Allen, CM Fauron, P Minx, L Roark, S Oddiraju, GN Lin, L Meyer, ...
Genetics 177 (2), 1173-1192, 2007
2572007
Using Internet search engines to obtain medical information: a comparative study
L Wang, J Wang, M Wang, Y Li, Y Liang, D Xu
Journal of Medical Internet Research 14 (3), e74, 2012
2332012
MusiteDeep: a Deep-learning Framework for General and Kinase-specific Phosphorylation Site Prediction
D Wang, S Zeng, C Xu, W Qiu, Y Liang, T Joshi, D Xu
Bioinformatics, 2017
2282017
Transcriptional and physiological responses of Bradyrhizobium japonicum to desiccation-induced stress
EJ Cytryn, DP Sangurdekar, JG Streeter, WL Franck, W Chang, G Stacey, ...
Journal of bacteriology 189 (19), 6751-6762, 2007
2202007
Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis
G Patil, B Valliyodan, R Deshmukh, S Prince, B Nicander, M Zhao, ...
BMC genomics 16 (1), 520, 2015
2142015
Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples
SM Tiquia, L Wu, SC Chong, S Passovets, D Xu, Y Xu, J Zhou
Biotechniques 36 (4), 664-675, 2004
1982004
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