Qiang Kou
Qiang Kou
Indiana University, Nyquist Data, Inc.
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TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization
Q Kou, L Xun, X Liu
Bioinformatics 32 (22), 3495-3497, 2016
Deep Top-Down Proteomics Using Capillary Zone Electrophoresis-Tandem Mass Spectrometry: Identification of 5700 Proteoforms from the Escherichia coli Proteome
EN McCool, RA Lubeckyj, X Shen, D Chen, Q Kou, X Liu, L Sun
Analytical chemistry 90 (9), 5529-5533, 2018
Single-shot top-down proteomics with capillary zone electrophoresis-electrospray ionization-tandem mass spectrometry for identification of nearly 600 Escherichia coli proteoforms
RA Lubeckyj, EN McCool, X Shen, Q Kou, X Liu, L Sun
Analytical chemistry 89 (22), 12059-12067, 2017
De Novo Protein Sequencing by Combining Top-Down and Bottom-Up Tandem Mass Spectra
X Liu, LJM Dekker, S Wu, MM Vanduijn, TM Luider, N Tolić, Q Kou, ...
Journal of proteome research 13 (7), 3241-3248, 2014
Native proteomics in discovery mode using size-exclusion chromatography–capillary zone electrophoresis–tandem mass spectrometry
X Shen, Q Kou, R Guo, Z Yang, D Chen, X Liu, H Hong, L Sun
Analytical chemistry 90 (17), 10095-10099, 2018
Simplicity of kmeans versus deepness of deep learning: A case of unsupervised feature learning with limited data
M Dundar, Q Kou, B Zhang, Y He, B Rajwa
2015 IEEE 14th International Conference on Machine Learning and Applications …, 2015
Quantitative top-down proteomics in complex samples using protein-level tandem mass tag labeling
D Yu, Z Wang, KA Cupp-Sutton, Y Guo, Q Kou, K Smith, X Liu, S Wu
Journal of the American Society for Mass Spectrometry 32 (6), 1336-1344, 2021
A mass graph-based approach for the identification of modified proteoforms using top-down tandem mass spectra
Q Kou, S Wu, N Tolić, L Paša-Tolić, Y Liu, X Liu
Bioinformatics 33 (9), 1309-1316, 2017
Characterization of proteoforms with unknown post-translational modifications using the MIScore
Q Kou, B Zhu, S Wu, C Ansong, N Tolic, L Paša-Tolić, X Liu
Journal of proteome research 15 (8), 2422-2432, 2016
A new scoring function for top-down spectral deconvolution
Q Kou, S Wu, X Liu
BMC genomics 15, 1-10, 2014
Large-scale top-down proteomics using capillary zone electrophoresis tandem mass spectrometry
EN McCool, R Lubeckyj, X Shen, Q Kou, X Liu, L Sun
JoVE (Journal of Visualized Experiments), e58644, 2018
Systematic Evaluation of Protein Sequence Filtering Algorithms for Proteoform Identification Using Top‐Down Mass Spectrometry
Q Kou, S Wu, X Liu
Proteomics 18 (3-4), 1700306, 2018
digest: Create compact hash digests of R objects
D Eddelbuettel, A Lucas, J Tuszynski, H Bengtsson, S Urbanek, M Frasca, ...
R package version 0.6 27, 2018
Rcpp: Seamless R and C++ Integration. R package version 0.12. 17
D Eddelbuettel, R François, J Allaire, K Ushey, Q Kou, N Russel, ...
Rcpp: Seamless R and C++ Integration. R package version 1.0. 3
D Eddelbuettel, R Francois, J Allaire, K Ushey, Q Kou, N Russell, D Bates, ...
Evaluation of top-down mass spectral identification with homologous protein sequences
Z Li, B He, Q Kou, Z Wang, S Wu, Y Liu, W Feng, X Liu
BMC bioinformatics 19, 21-28, 2018
A spectrum graph-based protein sequence filtering algorithm for proteoform identification by top-down mass spectrometry
R Yang, D Zhu, Q Kou, P Bhat-Nakshatri, H Nakshatri, S Wu, X Liu
2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017
A markov chain Monte Carlo method for estimating the statistical significance of proteoform identifications by top-down mass spectrometry
Q Kou, Z Wang, RA Lubeckyj, S Wu, L Sun, X Liu
Journal of proteome research 18 (3), 878-889, 2019
Package ‘Rcpp’
D Eddelbuettel, R Francois, JJ Allaire, K Ushey, Q Kou, N Russell, ...
Package ‘digest’
D Eddelbuettel, A Lucas, J Tuszynski, H Bengtsson, S Urbanek, M Frasca, ...
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